PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015126-PA
Common NameOsI_15841
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family E2F/DP
Protein Properties Length: 362aa    MW: 40178.3 Da    PI: 4.9155
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015126-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.22.1e-2693158171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       r+++sL+llt+kf++ll+++++gi++ln++ak L   dv  ++RRiYDi+NVLe+ +liekk kn+irw+g
  BGIOSGA015126-PA  93 RYDNSLGLLTRKFINLLKQAQDGILDLNDAAKIL---DV--RKRRIYDITNVLEGTGLIEKKLKNRIRWRG 158
                       689*******************************...**..9***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-2790159IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.6E-3393158IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.4E-1793156IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.2E-2395158IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146606.32E-29168247No hitNo description
SuperFamilySSF1440742.88E-24169248No hitNo description
PfamPF164211.0E-19173247IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSSGGGRPPA AQHIVRSVRQ RFVPLPPPLA RAPFAAAPGD YHRFAAASRG GEIDEGIVIR  60
RTPSCGIDAK VEGFVKCLSS GSPGNPSTPA SSRYDNSLGL LTRKFINLLK QAQDGILDLN  120
DAAKILDVRK RRIYDITNVL EGTGLIEKKL KNRIRWRGSD DSGTNLDSDI SCLKTEVENL  180
YIQEQALDRS ISEIREKMEE LTEDESNHRW LFVTEDDING LPCFQNEALI AIKGPRGTTV  240
EVPDPDELLP QKKLSDEHPY YIISQYKKME ELGETATPPR HASVVEPPSI ATEAGHSSKQ  300
TMPLNVQQDI QETPELNASR AFGRMKKITP SDVDTDADYW LLTDDDISIT HMWTTACILD  360
EI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-2486158273PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128150RKRRIYDITNVLEGTGLIEKKLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.525090.0callus| flower| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329775990.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0675810.0AK067581.1 Oryza sativa Japonica Group cDNA clone:J013113N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637107.10.0PREDICTED: transcription factor E2FA isoform X2
SwissprotQ9FNY03e-75E2FA_ARATH; Transcription factor E2FA
TrEMBLB8ATP40.0B8ATP4_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA015126-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.12e-78E2F transcription factor 3